PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015891672.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GRAS
Protein Properties Length: 566aa    MW: 64209.1 Da    PI: 6.8371
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015891672.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS142.64.1e-442334711241
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.sv.selykalppsetsekn..sseelaalklfsevsPil 91 
                     l +lLl++Ae v ++++  a++lL r + ++s++++p+qR++++f+eAL++ + r ++  ++ + ++ ++  e+    s+++ ++k  +++ P++
  XP_015891672.1 233 LAHLLLAAAEKVGHQQFVSASRLLLRREWISSSRANPVQRVVFCFAEALREMIEReTGrGKINERMENKNMGESPrrLSTSIPFVK-CYQAIPFP 326
                     579****************************************************3221234444433333322232344444433.67889*** PP

            GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg.ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                     ++  ++  q+Ile ve+++r+H iD++i  G+QW   ++aLa+R e     l+iT+vg    + ++++eetg+rL ++Ae+l++pf+f+++++++
  XP_015891672.1 327 QVLTFAGIQTILENVESQTRIHFIDLEIRSGVQWTIVMEALAARVECrIECLKITAVGY---TGTKKIEETGKRLVSVAESLNLPFSFKAVYVSN 418
                     ********************************************9651569********...6899***************************** PP

            GRAS 186 ledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241
                     ++d++ e ++++  +E+l++ ++l+l ++ +++ +le+    +++++ s+ P ++v+
  XP_015891672.1 419 MDDIKEELFEIEDdDESLIIYSSLALRTMISRPRCLEN----LMRAITSVYPSMMVC 471
                     ***********999****************99999999....*************98 PP

2GRAS48.91.1e-15474564284374
            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +E + l++ i+++va+eg+er+ r+ ++e Wr+ + +  + + +ls+ a+ q +l+ ++++ +   +ve + ++l+ gWk+ p+ s+S+W+
  XP_015891672.1 474 AIEGV-LAEGIRDIVAKEGSERITRNVKMEVWRAFFARYKMVETKLSDAAMYQTSLVAKQFGcGSACNVERNGKCLIAGWKGTPINSLSVWK 564
                     45555.999*****************************************************9999*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098524.427207566IPR005202Transcription factor GRAS
PfamPF035141.4E-41233471IPR005202Transcription factor GRAS
PfamPF035143.9E-13474564IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MDNGNLFSFT PFDFNGFPGE YGPPEHYEEE EPAVLKGKQG LCPAGVQDFQ NVNHLPLKFS  60
FYQQVNNNTK NFEDDQHQEQ QQQHQESKSD YMVFDDFDTL GPAAKPVSRQ ESSSHQLIVC  120
SGPNRSSSTG TDIAESITQM QIPSLSSMGL LSDYGNFGFK KLKGDQRLSN VSMSRSYMSR  180
KKSSTEEIMR VAGARYIQFF NRYYYDDYHN MPMHPFGYAL SGLSGEETRD VELAHLLLAA  240
AEKVGHQQFV SASRLLLRRE WISSSRANPV QRVVFCFAEA LREMIERETG RGKINERMEN  300
KNMGESPRRL STSIPFVKCY QAIPFPQVLT FAGIQTILEN VESQTRIHFI DLEIRSGVQW  360
TIVMEALAAR VECRIECLKI TAVGYTGTKK IEETGKRLVS VAESLNLPFS FKAVYVSNMD  420
DIKEELFEIE DDDESLIIYS SLALRTMISR PRCLENLMRA ITSVYPSMMV CRKAIEGVLA  480
EGIRDIVAKE GSERITRNVK MEVWRAFFAR YKMVETKLSD AAMYQTSLVA KQFGCGSACN  540
VERNGKCLIA GWKGTPINSL SVWKFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015891672.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLM5VUD51e-174M5VUD5_PRUPE; Uncharacterized protein
STRINGPOPTR_0014s11510.11e-155(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-30RGA-like 1